Welcome to the ScanOMetrics documentation !

ScanOMetrics is a Python library for automated morphometric analysis and normative modeling of MRI anatomical scans.

Check out the Setup section for further information, including how to install our app.

Note

Please cite the following papers when using ScanOMetrics:

Rummel, C., Slavova, N., Seiler, A. et al. Personalized structural image analysis in patients with temporal lobe epilepsy. Sci Rep 7, 10883 (2017). https://doi.org/10.1038/s41598-017-10707-1

Rummel C, Aschwanden F, McKinley R, Wagner F, Salmen A, Chan A, Wiest R. A Fully Automated Pipeline for Normative Atrophy in Patients with Neurodegenerative Disease. Front Neurol., 8:727 (2018). https://doi.org/10.3389/fneur.2017.00727

Romascano D, Rebsamen M, Radojewski P, Blattner T, McKinley R, Wiest R, Rummel C. Cortical thickness and grey-matter volume anomaly detection in individual MRI scans: Comparison of two methods. NeuroImage Clin. 43, 103624 (2024). https://doi.org/10.1016/j.nicl.2024.103624

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