Welcome to the ScanOMetrics documentation !
=============================================

ScanOMetrics is a Python library for automated morphometric analysis and normative modeling of MRI anatomical scans.

Check out the :doc:`setup` section for further information, including
how to :ref:`install <installation>` our app.


.. note::

   Please cite the following papers when using ScanOMetrics:


   Rummel, C., Slavova, N., Seiler, A. et al.
   Personalized structural image analysis in patients with temporal lobe epilepsy.
   Sci Rep 7, 10883 (2017). https://doi.org/10.1038/s41598-017-10707-1

   Rummel C, Aschwanden F, McKinley R, Wagner F, Salmen A, Chan A, Wiest R.
   A Fully Automated Pipeline for Normative Atrophy in Patients with Neurodegenerative Disease.
   Front Neurol., 8:727 (2018). https://doi.org/10.3389/fneur.2017.00727

   Romascano D, Rebsamen M, Radojewski P, Blattner T, McKinley R, Wiest R, Rummel C.
   Cortical thickness and grey-matter volume anomaly detection in individual MRI scans: Comparison of two methods.
   NeuroImage Clin. 43, 103624 (2024). https://doi.org/10.1016/j.nicl.2024.103624


Contents
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.. toctree::

   setup
   tutorials
   api