Tutorials

ScanOMetrics can be used through either the dedicated GUI, or our command line implementation.

• Graphical User Interface (GUI)
  • Main window
    • Select BIDS folder
    • Select normative model
    • Select subject
    • Select session
    • Select acquisition
    • Go to visualization window
  • Visualization window
    • Run processing pipeline
    • Visualizing evaluation results
    • Selecting relevant information
    • Generating report
• Command line implementation
  • Processing MRI data
  • Single subject evaluation
  • Group evaluation
  • Fit a normative model
  • Adding a processing module

Command line usage is intended for users with basic knowledge in python programming:

• Evaluate single subject
  • Loading and setting up subject and normative model
  • Comparison against normative curves
  • Full script
• Group comparison
  • Loading and setting up subjects and normative model
  • Statistical comparison
  • Full script
• Processing of MRI scans (tutorial)
  • Configure the processing pipeline
• Fit normative data (tutorial)
  • Full script
• Adding a processing module to Scan-O-Metrics
  • Add processing module to scanometrics.processing.<new_module>.py
  • Add processing pipeline to scanometrics.processing.__init__.py file
• Leave One Out Cross-Validation (tutorial)
  • Filtering healthy subjects
    • Full script
• dicom2bids (utility tool)
  • Usage
  • BIDS folder structure